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After LSF-HPC integrated with SLURM allocates nodes for a job, it attaches allocation information to the
job.
The bjobs -l command provides job allocation information on running jobs. The bhist -l command
provides job allocation information for a finished job. For details about using these commands, see the
LSF manpages .
A job allocation information string resembles the following:
slurm_id=slurm_jobid;ncpus=slurm_nprocs;slurm_alloc=node_list
This allocation string has the following values:
slurm_id SLURM_JOBID environment variable. This is SLURM allocation ID (Associates LSF-HPC
job with SLURM allocated resources.)
ncpus SLURM_NPROCS environment variable. This the actual number of allocated cores. Under
node-level allocation scheduling, this number may be bigger than what the job requests.)
slurm_alloc
A comma separated list of allocated nodes.
LSF-HPC integrated with SLURM sets the SLURM_JOBID and SLURM_NPROCS environment variables,
when it starts a job.
Example 10-1 illustrates how to use the the bjobs -l command to obtain job allocation information about
a running job:
Example 10-1 Job Allocation Information for a Running Job
$ bjobs -l 24
Job <24>, User <lsfadmin>, Project <default>,
Status <RUN>, Queue <normal>,
Interactive pseudo-terminal shell mode,
Extsched <SLURM[nodes=4]>, Command </bin/bash>
date and time stamp: Submitted from host <n2>, CWD <$HOME>,
4 Processors Requested, Requested Resources <type=any>;
date and time stamp: Started on 4 Hosts/Processors <4*lsfhost.localdomain>;
date and time stamp: slurm_id=22;ncpus=8;slurm_alloc=n[5-8];
SCHEDULING PARAMETERS:
r15s r1m r15m ut pg io ls it tmp swp mem
loadSched - - - - - - - - - - -
loadStop - - - - - - - - - - -
EXTERNAL MESSAGES:
MSG_ID FROM POST_TIME MESSAGE ATTACHMENT
0 - - - -
1 lsfadmin date and time stamp SLURM[nodes=4] N
In particular, note the node and job allocation information provided in the above output:
date and time stamp: Started on 4 Hosts/Processors <4*lsfhost.localdomain>;
date and time stamp: slurm_id=22;ncpus=8;slurm_alloc=n[5-8];
Example 10-2 illustrates how to use the output obtained using the bhist -l command to obtain job
allocation information about a job that has run:
10.11 Getting Information About Jobs 93
- HP XC System Software 1
- User's Guide 1
- Table of Contents 3
- 4 Table of Contents 4
- Table of Contents 5 5
- 6 Table of Contents 6
- List of Figures 7
- List of Examples 11
- About This Document 13
- 14 About This Document 14
- 5 Related information 15
- 16 About This Document 16
- Linux Web Sites 17 17
- 6 Manpages 18
- 7 HP Encourages Your Comments 18
- 1.1 System Architecture 19
- 1.1.4 Node Specialization 20
- 1.1.5 Storage and I/O 21
- 1.1.6 File System 21
- 1.3 User Environment 23
- 1.5 Run-Time Environment 24
- 1.5.3 Standard LSF 25
- 1.5.5 HP-MPI 26
- 2 Using the System 27
- 2.2.1 Introduction 28
- 30 Using the System 30
- 3.1 Overview of Modules 31
- 3.2 Supplied Modulefiles 32
- 3.6 Loading a Modulefile 34
- 3.7 Unloading a Modulefile 34
- 3.9 Modulefile Conflicts 35
- 3.10 Creating a Modulefile 35
- 4 Developing Applications 37
- 4.4 Interrupting a Job 38
- 4.5 Setting Debugging Options 39
- 4.7.1.1 Modulefiles 40
- 4.7.1.2 HP-MPI 40
- 4.7.1.3 OpenMP 40
- 4.7.1.4 Pthreads 40
- 42 Developing Applications 42
- 4.8 Developing Libraries 43
- 44 Developing Applications 44
- 4.8 Developing Libraries 45 45
- 5 Submitting Jobs 47
- 48 Submitting Jobs 48
- 5.3 Submitting a Parallel Job 49
- 50 Submitting Jobs 50
- 52 Submitting Jobs 52
- 54 Submitting Jobs 54
- 56 Submitting Jobs 56
- 6 Debugging Applications 57
- 6.2.1.1 SSH and TotalView 58
- 6.2.1.2 Setting Up TotalView 58
- 60 Debugging Applications 60
- 6.2.1.8 Exiting TotalView 61
- 7 Monitoring Node Activity 63
- 64 Monitoring Node Activity 64
- 66 Monitoring Node Activity 66
- 68 Monitoring Node Activity 68
- 70 Monitoring Node Activity 70
- 8 Tuning Applications 73
- 74 Tuning Applications 74
- 8.2.1 Installation Kit 75
- Running a Program 76
- 9 Using SLURM 79
- 9.3.1.1 The srun Roles 80
- 9.3.1.2 The srun Modes 80
- 9.7 Job Accounting 81
- 9.9 Security 82
- 9.8 Fault Tolerance 82
- 10 Using LSF-HPC 83
- 84 Using LSF-HPC 84
- 10.4 Job Terminology 86
- 10.5.1 Useful Commands 87
- 10.5.3 Preemption 87
- 10.6 Submitting Jobs 88
- SLURM_JOBID=53 89
- SLURM_NPROCS=4 89
- 90 Using LSF-HPC 90
- 92 Using LSF-HPC 92
- 94 Using LSF-HPC 94
- 96 Using LSF-HPC 96
- 98 Using LSF-HPC 98
- 100 Using LSF-HPC 100
- 102 Using LSF-HPC 102
- 11 Advanced Topics 103
- 104 Advanced Topics 104
- 106 Advanced Topics 106
- 11.3.1 Example Procedure 1 107
- 11.3.3 Example Procedure 3 108
- 11.3.2 Example Procedure 2 108
- 11.5.1 Shared File View 109
- 11.5.2 Private File View 109
- 110 Advanced Topics 110
- A Examples 113
- Submit the job: 114
- View the job: 115
- 116 Examples 116
- Exit from the shell: 117
- Show the environment: 117
- Display the script: 118
- Run the job: 118
- Submit the job: 119 119
- View the finished jobs: 120
- View the node state: 120
- View the running job: 121
- View the finished job: 121
- 122 Examples 122
- Glossary 123
- 124 Glossary 124
- 126 Glossary 126
- 130 Index 130
- 132 Index 132
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