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EXTERNAL MESSAGES:
MSG_ID FROM POST_TIME MESSAGE ATTACHMENT
0----
1 lsfadmin date and time stamp SLURM[nodes=4] N
In particular, note the nod e and job allocation information provided in the above output:
date and time stamp: Started on 4 Hosts/Processors <4*lsfhost.localdomain>;
date and time stamp: slurm_id=22;ncpus=8;slurm_alloc=n[5-8];
7.5.1.2 Job Allocation Information for a Finished Job
The following is an ex amp le of the output obtained usin g the bhist -l com mand to obtain
job allocation information about a jo b that has run:
$ bhist -l 24
Job <24>, User <lsfadmin>, Project <default>,
Interactive pseudo-terminal shell mode,
Extsched <SLURM[nodes=4]>, Command </bin/bash>
date and time stamp: Submitted from host <n2>,
to Queue <normal>, CWD <$HOME>,
4 Processors Requested, Requested Resources <type=any>;
date and time stamp: Dispatched to 4 Hosts/Processors
<4*lsfhost.localdomain>;
date and time stamp: slurm_id=22;ncpus=8;slurm_alloc=n[5-8];
date and time stamp: Starting (Pid 4785);
date and time stamp: Done successfully.
The CPU time used is 0.1 seconds;
date and time stamp: Post job process done successfully;
Summary of time in seconds spent in various states by date and time stamp
PEND PSUSP RUN USUSP SSUSP UNKWN TOTAL
11 0 220 0 0 0 231
In particular, note the nod e and job allocation information provided in the above output:
date and time stamp: Dispatched to 4 Hosts/Processors
<4*lsfhost.localdomain>;
date and time stamp: slurm_id=22;ncpus=8;slurm_alloc=n[5-8];
7.5.2 Checking Status of a Job
Once a job is subm itted, you can use the bjobs command to track the job’s progress. The
bjobs comman d reports the status of a jo b submitted to LSF. By default, bjobs lists only the
user’s jobs that have not finished or exited. The following are examples of using the bjobs
command, an d shows the output it produces on an HP XC system. For more inform ation about
the bjobs command and its output, refer to the LSF manpages.
Example 7-13 provides abbreviated output of the bjobs command.
Example 7-13: Using the bjobs Command (Short Output)
$ bjobs 24
JOBID USER STAT QUEUE FROM_HOST EXEC_HOST JOB_NAME SUBMIT_TIME
24 msmith RUN normal n16 lsfhost.localdomain /bin/bash date and time
As shown in the previous output, the bjobs command returns information th at includes the job
id, user name, job status, queue name, submitting host, executing host, job name, and submit
time. In t his example, the output sho ws that job /bin/bash was submitted from node n16
and launched on execution host lsfhost.localdomain.
Example 7-14 provides extended output of the bjobs command.
7-18 Using LSF
- HP XC System Software 1
- Contents 3
- 3 Developing Applications 4
- 4 Debugging Applications 5
- 5 Tuning Applications 5
- 6UsingSLURM 5
- 8UsingHP-MPI 6
- 7 Using LSF 6
- 9UsingHPMLIB 7
- 10 Advanced Topics 8
- AExamples 8
- About This Document 11
- HP XC Inform ation 12
- For M ore Information 13
- Supplementary Information 13
- Manpages 14
- Related Information 15
- Typographical Conventions 16
- HP Encourages Your Comments 17
- 1.1 System Architecture 19
- 1.1.3 Storage and I/O 20
- 1.1.4 File System 20
- 1.2 User Environment 22
- 1.3.1 Parallel Applications 23
- 1.3.2 Serial Applications 23
- 1.4 Run-Time E nvironment 24
- 1.4.4 HP-MPI 25
- Using the System 27
- 2.2.1 Notes on Modulefiles 28
- 2.2.2 Supplied Modulefiles 29
- 2.2.6 Loading a Modulefile 30
- 2.2.7 Unloading a M odulefile 31
- 2.2.8 Modulefile Conflicts 31
- 2.2.9 Creating a Mod u lefile 32
- 2.3.1 Introduction 33
- 2.3.5 Launching Jobs 34
- $ man sinfo 39
- $ man -k keyword 39
- Using the System 2-13 39
- Developing Applications 41
- 3.2 Using Compilers 42
- 3.4 Interrupting a Job 43
- 3-4 Developing Applications 44
- Developing Applications 3-5 45
- 3-6 Developing Applications 46
- Developing Applications 3-7 47
- $ module load mpi 48
- $ mpicc -o mycode hello.c 48
- $ mpif90 -o mycode hello.f 48
- 3-8 Developing Applications 48
- 3.8 Developing Libraries 49
- 3.9 Advanced To pics 50
- 3-14 Deve loping Applications 54
- Developing Applications 3-15 55
- Debugging Applications 57
- 4-2 D ebugging Applications 58
- $ totalview 60
- 4-4 D ebugging Applications 60
- Debugging Applications 4-5 61
- 4-6 D ebugging Applications 62
- -verbosity %V %F" 63
- Debugging Applications 4-7 63
- 4-8 D ebugging Applications 64
- Etnus TotalView Version# 65
- Debugging Applications 4-9 65
- $ mpirun -srun -n2 Psimple 66
- 4-10 Debugging Applications 66
- $ squeue 67
- $ scancel --user username 67
- Debugging Applications 4-11 67
- Tuning Applications 69
- Using SLURM 71
- $ srun -N 16 -b myscript.sh 73
- $ srun -A -N 4 myscript.sh 73
- $ srun -a 6543 -j 73
- Using SLURM 6-3 73
- 6.4.2 srun Signal Handling 74
- 6.4.3 srun Run-Mode Options 74
- Using SLURM 6-5 75
- 6-6 Using SLURM 76
- 6.4.5 srun Control Options 77
- 6.4.6 srun I/O Options 78
- Using SLURM 6-9 79
- 6.4.7 srun Constraint Options 80
- Using SLURM 6-11 81
- 6.4.9 Using srun with HP-MPI 82
- 6.4.10 Using srun with LSF 82
- 6.8 Job Accounting 84
- 6.9 Fault Tolerance 84
- 6.10 Security 84
- Using LSF 85
- 7.1.2 Topology Support 86
- 7.1.3 Notes on LSF-HPC 87
- SLURM_JOBID=53 89
- SLURM_NPROCS=4 89
- 7-6 Using LSF 90
- 7.3.1 Getting Status of LSF 91
- $ bhosts 92
- 7-8 Using LSF 92
- 7.4 Submitting Jobs 93
- 7.4.3 Submitting a Serial Job 97
- Using LSF 7-17 101
- 7-18 Using LSF 102
- Using HP-MPI 111
- 8.3.3 Using srun with HP-MPI 114
- 8.3.4 Using LSF and HP-MPI 116
- 8.3.5 MPI Versioning 117
- 8.6 Truncated Messages 118
- 8.5 32-Bit B uilds on XC4000 118
- Using HP-MPI 8-9 119
- 8.9 Environment Variables 120
- 8.9.5 MPI_PIN_PERCENTAGE 121
- 8.9.6 MPI_PAGE_ALIGN_MEM 121
- 8.9.7 MPI_MAX_WINDOW 121
- 8.9.8 MPI_ELANLOCK 121
- 8.9.9 MPI_USE_LIBELAN 121
- 8.9.10 MPI_USE_LIBELAN_SUB 122
- Work-arounds 124
- Using HP MLIB 125
- 9.1.2 MLIB and Module Files 126
- 9.2.1 Platform Sup port 126
- 9.2.2 Library Support 126
- 9.2.3 MPI Parallelism 126
- 9.2.4 Modulefiles and MLIB 127
- 9.2.6 Compiling and Linking 127
- 9.2.7 Licensing 128
- 9.2.8 MLIB Man pages 128
- 9.3.1 Platform Sup port 128
- 9.3.2 Library Support 128
- 9.3.3 MPI Parallelism 129
- 9.3.4 Modulefiles and MLIB 129
- 9.3.5 Compiling and Linking 129
- 9.3.6 Licensing 130
- 9.3.7 MLIB Man pages 130
- Advanced Topics 131
- Examples 135
- $ lshosts 140
- Show the environment: 142
- Run the job: 142
- View the running job: 142
- View the finished job: 142
- Examples A-9 143
- Glossary 145
- Glossary-2 146
- Glossary-3 147
- Glossary-4 148
- Glossary-5 149
- Glossary-6 150
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